JMOL SCRIPT WINDOWS

JMOL SCRIPT WINDOWS

Windows Notepad), not a word processor like MS-Word.Įach command may go in its own line, or you may put several in one line but then you must use semicolons ( ) to separate them. If it still does not appear, check that JavaScript is enabled in your browser. Keep in mind that you should have a vision of what you want to accomplish before consulting a scripting reference. Pages in Proteopedia use a javascript form of Jmol called JSmol, which operates automatically within a web browser. Olaf University is an exhaustive list of Jmol commands. The Interactive Script Documentation from St. With the following script I can split it on newlines and add it explicitly to the jsmol script like so: var script load data 'myData'n script + result script + end 'myData'n Jmol.script (resultsApplet, script) This works but I now do. Jmol still thinks the center of the entire model is the zoom center, so zooming flies right past the helix. I'm thinking that this is more likely to be possible, since both are running in the same browser and both know html and javascript so there is a common. Important: it is a plain-text file you need a text editor (e.g. In my javascript I thus have a variable result that contains the cube file I want to display. The other way would be to link to an already running jmol or jsmol object in the same browser, different tab, and show the same thing in notebook inline and rotate it from there as I present. spt extension, but you may use anything, e.g.txt. Third, the jmol loading and script information: script: load pdbfiles/. It is common among Jmol users to name the file with an. Check that your jmol folder contains a folder called jmolpages. j2s/core/core.z.js - required by ClazzNode Jmol JavaScript applet jmolobject943970666266978 initializing Jmol. This is called a script, meaning a storyboard (a 'Jmol script' saved into a 'script file'). The best way to think about using Jmol is to imagine what you would actually like to do, then figure out which scripting commands fit your purpose. Groups of consecutive commands that you want to reuse may be stored in a text file.